circRNA_finder
A software pipeline for finding circular RNAs from RNA-seq data, based on STAR. circRNA_finder has the capacity to identify circRNAs with very proximal splice sites (below 100 bp).
find_circ
python code to detect head-to-tail spliced (back-spliced) sequencing reads, indicative of circular RNA (circRNA) in RNA-seq data
A combined strategy to identify circular RNAs
Complementary Sequence-Mediated Exon Circularization
https://github.com/YangLab/CIRCexplorer
CIRI
(circRNA identifier) is a novel chiastic clipping signal based algorithm, which can unbiasedly and accurately detect circRNAs from transcriptome data by employing multiple filtration strategies.
https://sourceforge.net/projects/ciri/files/
https://github.com/YangLab/CIRCexplorer
(circRNA identifier) is a novel chiastic clipping signal based algorithm, which can unbiasedly and accurately detect circRNAs from transcriptome data by employing multiple filtration strategies.
https://sourceforge.net/projects/ciri/files/
MapSplice
MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome, and not on any further annotations.
http://www.netlab.uky.edu/p/bioinfo/MapSplice2
UROBORUS is a computational pipeline to detect circular RNA from RNA-Seq data, based on junction reads from back spliced exons.
http://uroborus.openbioinformatics.org/en/latest/
